The joint project "MMML Demonstrators" deals with improvements in the diagnosis and therapy of lymphoma and consists of seven subprojects. In lymphoma, the so-called diffuse large cell B-cell lymphomas (DLBCL) are responsible for the highest number of deaths. Although the disease is curable in principle, approximately one third of patients still die. However, the expression of certain genes in tumor cells and surrounding tissues can be used to diagnose certain subgroups of these tumors and, in particular, to identify high-risk patients. Detailed knowledge of the biology of these tumors allows the measured gene expression pattern to be used to select an optimal, adapted therapy option. The present joint project will use a new technique for gene expression measurement, which should significantly reduce the workload and costs for a molecular diagnosis. The partners will establish this new technique for routine diagnostics and validate it both with improved histological methods and in the clinic. At the same time, the measured gene expression patterns will be used in a computer model to predict possible therapies. The focus is on the interaction of tumor cells with the surrounding tissue. At the end of the project, the findings will be combined in a web portal and made available to physicians and scientists. The insights gained in this project are thus a first step towards molecular-biological diagnostics and personalised therapy of lymphomas.
Programme: This Project is not associated with a Programme
LHA ID: 7UACP8PCK2-4
Funding codes:- BMBF
Public web page: https://www.sys-med.de/de/demonstratoren/mmml-demonstrators/
Human Diseases: Diffuse large b-cell lymphoma
Health Atlas - Local Data Hub/Leipzig PALs: Rainer Spang, Markus Löffler
Project Coordinators: No Project coordinators for this Project
Project start date: 1st Jan 2015
Project end date: 31st Dec 2018
Related items
- Institutions (2)
- Investigations (1)
- Publications (3)
- Data files (47)
- Models (1)
- People (4)
- Human Diseases (1)
Country: Germany
City: Regensburg
Web page: https://www.ukr.de/kliniken-institute/funktionelle-genomik/index.php
ROF filter based segmentation methods will be employed for automated recognition of macrophages, B-cells and cell nuclei within the tissue samples.
Snapshots: No snapshots
Abstract (Expand)
Authors: Marcus Wagner, Sarah Reinke, René Hänsel, Wolfram Klapper, Ulf-Dietrich Braumann
Date Published: 12th Mar 2020
Publication Type: Journal article
Human Diseases: diffuse large B-cell lymphoma
DOI: 10.1093/gigascience/giaa016
Citation: GigaScience,9(3)
Abstract (Expand)
Authors: M. Pfreundschuh, E. Kuhnt, L. Trumper, A. Osterborg, M. Trneny, L. Shepherd, D. S. Gill, J. Walewski, R. Pettengell, U. Jaeger, P. L. Zinzani, O. Shpilberg, S. Kvaloy, P. de Nully Brown, R. Stahel, N. Milpied, A. Lopez-Guillermo, V. Poeschel, S. Grass, M. Loeffler, N. Murawski
Date Published: 24th Sep 2011
Publication Type: Not specified
Human Diseases: non-Hodgkin lymphoma, diffuse large B-cell lymphoma
PubMed ID: 21940214
Citation: Lancet Oncol. 2011 Oct;12(11):1013-22. doi: 10.1016/S1470-2045(11)70235-2. Epub 2011 Sep 21.
Abstract (Expand)
Authors: Marcus Wagner, René Hänsel, Sarah Reinke, Julia Richter, Michael Altenbuchinger, Ulf-Dietrich Braumann, Rainer Spang, Markus Löffler, Wolfram Klapper
Date Published: No date defined
Publication Type: Not specified
Human Diseases: diffuse large B-cell lymphoma
DOI: 10.1186/s12575-019-0098-9
Citation:
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This is a set of MATLAB procedures for automated segmentation and counting of macrophages in multiple IHC stained tissue samples. Execution assumes that three aligned single-channel greyscale images of a given tissue area are available, representing IHC stainings with CD14 and CD163 antibodies (targeting macrophages) as well as DAPI staining (targeting cell cores). After detection of evaluation subregion (based on DAPI channel information), IHC stained macrophages will be masked and counted (based ...
Creators: René Hänsel, Marcus Wagner
Submitter: René Hänsel
Model type: Not specified
Model format: Matlab package
Environment: Matlab
Organism: Not specified
Human Disease: diffuse large B-cell lymphoma
Investigations: No Investigations
Studies: No Studies
Resources: No Resources
Projects: LHA - Leipzig Health Atlas, LIFE Adult, LIFE - Leipzig Research Center for Civilization Diseases, LIFE HNC - Head and Neck Cancer Group, LIFE Heart, MMML - Molecular mechanisms in malignant lymphoma, GLA - German Lymphoma Alliance, MMML Demonstrators - Molecular Mechanisms in Malignant Lymphomas - Demonstrators of Personalized Medicine, HaematoOpt - Individualized model-based managing of the next-cycle thrombopenia of CHOEP/CHOP treated patients based on platelets dynamics during the previous cycles, e:Med, GC-HBOC - German Consortium for Hereditary Breast and Ovarian Cancer, GC-HNPCC - German Consortium for Hereditary Non-Polyposis Colorectal Cancer, MMML-MYC-SYS, NLP4CR - Natural Language Processing for Clinical Research, Genetical Statistics and Systems Biology, SepNet - German Competence Network Sepsis, LIFE Child, HNPCC-Sys - Genomic and transcriptomic heterogeneity of colorectal tumours arising in Lynch syndrome, GGN - German Glioma Network, CAPSys - Footprints of Sepsis Framed Within Community Acquired Pneumonia in the Blood Transcriptome, CapSys - Systems Medicine of Community Acquired Pneumonia, ProstataCA, HaematoSys - Systems biology of haematopoiesis and haematopoietic neoplasia, SMITH - Smart Medical Information Technology for Healthcare, Task Force COVID-19 Leipzig, NFDI4Health, POLAR - Polypharmacy, Drug Interactions, Risks, Management of health information systems, LivSys Transfer - Transfer of the LivSys in vitro system for hepatotoxicity into application, Project Test Demonstrator, Fundus photography as tool for analysis of eyes of subjects with diabetes, Clinical Trials Leipzig, NFDI4Health - TA3 Services, STOP-NUC, SCALE-TORT, EarlyAMDRate
Institutions: Institute for Medical Informatics, Statistics and Epidemiology (IMISE)
https://orcid.org/0000-0001-8344-0658Roles: Technician
Expertise: Data Management, Data analysis, Python, Html
Projects: LHA - Leipzig Health Atlas, LIFE Adult, LIFE - Leipzig Research Center for Civilization Diseases, LIFE HNC - Head and Neck Cancer Group, MMML - Molecular mechanisms in malignant lymphoma, GLA - German Lymphoma Alliance, MMML Demonstrators - Molecular Mechanisms in Malignant Lymphomas - Demonstrators of Personalized Medicine, MMML-MYC-SYS, Genetical Statistics and Systems Biology, SepNet - German Competence Network Sepsis, HaematoSys - Systems biology of haematopoiesis and haematopoietic neoplasia, e:Med, SMITH - Smart Medical Information Technology for Healthcare, Task Force COVID-19 Leipzig, NFDI4Health, POLAR - Polypharmacy, Drug Interactions, Risks
Institutions: Institute for Medical Informatics, Statistics and Epidemiology (IMISE), University of Leipzig
Prof. Dr. Markus Löffler Universität Leipzig Institut für Medizinische Informatik, Statistik und Epidemiologie Härtelstraße 16-18 04107 Leipzig
Projects: MMML Demonstrators - Molecular Mechanisms in Malignant Lymphomas - Demonstrators of Personalized Medicine, GLA - German Lymphoma Alliance
Institutions: Universität Regensburg, Institut für funktionale Genomik
Prof. Dr. Rainer Spang Universität Regensburg Institut für Funktionale Genomik Am BioPark 9 93053 Regensburg
Projects: MMML Demonstrators - Molecular Mechanisms in Malignant Lymphomas - Demonstrators of Personalized Medicine, GLA - German Lymphoma Alliance, EarlyAMDRate
Institutions: Institute for Medical Informatics, Statistics and Epidemiology (IMISE)
https://orcid.org/0000-0001-9063-1452Universität Leipzig Institut für Medizinische Informatik, Statistik und Epidemiologie (IMISE) Härtelstr. 16-18 04107 Leipzig
Taxonomy URI: http://purl.obolibrary.org/obo/DOID_0050745
Definitions: A B-cell lymphoma that is a cancer of B cells presenting as an aggressive tumour which can arise in virtually any part of the body.