scRNA-Seq expression data as RDS Seurat file

Motivation:

To provide data input and result from a scRNA-Seq integration workflow

For our R-based workflow on GitHub pulmonologists_interspecies_scRNA, we here provide the required scRNA-Seq input data, four Seurat RDS files.

Mouse: s511_1_diet_mouse.RDS,, own data created for the manuscript

Hamster:s511_1_diet_hamster.RDS, reformated data of naïve controls from publication Nouailles G, Wyler E, Pennitz P, et al. Temporal omics analysis in Syrian hamsters unravel cellular effector responses to moderate COVID-19. Nat Commun 2021; 12: 4869.

Human Travagli: s511_1_diet_human_travaglini.RDS ,reformated data of patient 2 from Travaglini KJ, Nabhan AN, Penland L, et al. A molecular cell atlas of the human lung from single-cell RNA sequencing. Nature 2020; 587: 619-25.

Human Charite: s511_1_diet_human_charite.RDS, own data created for the manuscript.

We also provide processed resulting annotated integrated Seurat file: s1_3_human_mouse_hamster_integrated.RDS

LHA ID: 88KGR6281K-6

Experimental assay

Holger Kirsten

Projects: Genetical Statistics and Systems Biology, LIFE Adult, LIFE Heart

Investigation: OMICS Investigations

Study: scRNA-Seq across species for pulmonologists

Assay position:

Resource type: Experimental Assay Type

Technology type: Technology Type

Human Diseases: No human diseases




help Creators and Submitter
Creator
Submitter
Activity

Views: 865

Created: 9th Sep 2021 at 09:26

Last updated: 28th Mar 2022 at 12:57

Powered by
(v.1.13.0-master)
Copyright © 2008 - 2021 The University of Manchester and HITS gGmbH
Institute for Medical Informatics, Statistics and Epidemiology, University of Leipzig

By continuing to use this site you agree to the use of cookies