I am a research associate at IMISE, Universität Leipzig.
LHA ID: 7WDQPT9398-7
Location:
Germany
ORCID:
https://orcid.org/0000-0002-7221-7415
Joined: 29th Jul 2020
NLP4CR - Natural Language Processing for Clinical Research (Institute for Medical Informatics, Statistics and Epidemiology (IMISE))
SMITH - Smart Medical Information Technology for Healthcare (Institute for Medical Informatics, Statistics and Epidemiology (IMISE))
3LGM² Enterprise Architecture Modeling (Institute for Medical Informatics, Statistics and Epidemiology (IMISE)) ; MI-Lab (Institute for Medical Informatics, Statistics and Epidemiology (IMISE))
Related items
- Projects (4)
- Institutions (1)
- Investigations (5)
- Studies (5)
- Resources (1)
- Publications (42)
- Data files (1)
- Models (1)
- Documents (6)
- Programmes (3)
Programme: Management von Gesundheitsinformationssystemen (MaGIS)
Public web page: https://www.3lgm2.de/
Organisms: Not specified
Open-Science-Lehrmaterialien für die Medizininformatik basierend auf Werkzeugen und Diensten von NFDI4Health
Programme: Science with and for Society (SwafS) in Horizon 2020
Public web page: https://github.com/IMISE/MI-Lab
Organisms: Not specified
Medical data routinely generated in everyday clinical practice is processed and made available to medical research in a standardized form. Patients benefit from reliable research results, more precise diagnoses and better treatments. In order to link data from care and research, the participating university hospitals in Aachen, Bonn, Essen, Halle, Hamburg, Jena and Leipzig have established sustainable Data Integration Centers. The network partners Ruhr University Bochum, the Düsseldorf University ...
Programme: MII - Medical Informatics Initiative
Public web page: https://www.smith.care/
Start date: 1st Jan 2018
Organisms: Homo sapiens
The NLP4CR project was initiated as part of Colleen Goldberg's master thesis. Medical information is not always available in a structured form, but as free text documentation. NLP techniques make it possible to analyse, annotate and extract these free texts. In this way, medical data can be made accessible for machine processing and for clinical research.
Programme: This Project is not associated with a Programme
Public web page: http://www.imise.uni-leipzig.de/Gruppen/MIG
Start date: 1st Jan 2015
Organisms: Not specified
Drei-Ebenen-Meta-Modell zur Beschreibung, Bewertung und Planung von Informationssystemen im Gesundheitswesen. Homepage: https://www.3lgm2.de/
Snapshots: No snapshots
Die Möglichkeiten zur Modellierung von Informationssystemarchitekturen durch die 3LGM² Methode und mit Hilfe des 3LGM² Tools wurde mit diesem Vorhaben erweitert, sodass IHE (Integrating the Healthcare Enterprise) Profile, Akteure und Transaktionen genutzt werden können. Es wurden weitere Fortschritte erziehlt, u.a.:
- Template Browser für Entwurfsmuster (Profil- und Modell-Template), z.B.:
- IHE Profile
- Archivierung von Krankenakten (AKU-IHE)
- Datenintegrationszentrum (DIZ)
- Biobank
- TMF ...
Snapshots: No snapshots
Submitter: Matthias Löbe
Studies: Lisa's liver tumor study, MI-Lab Übung 01 Annotierung, MI-Lab Übung 02 CSV-to-FHIR, MI-Lab Übung 03 Privacy, MI-Lab Übung 04 Local Data Hub, MI-Lab Übung 05 Datenanalyse, MI-Lab Übung 06 Datenqualitätsanalysen
Resources: Lisa's liver tumor dataset, MIMIC-IV Demo (Teilmenge in FHIR)
Snapshots: No snapshots
Submitter: Matthias Löbe
Studies: The European Health Data Space (EHDS) as 3LGM²-based enterprise architec...
Resources: model files, screenshots
Snapshots: No snapshots
Ressource related to the information architecture subsuming the central FAIR4Health Platform and the local FAIR4Health agents.
Submitter: Matthias Löbe
Studies: 3LGM² model for FAIR4Health
Resources: 3LGM² local model DIC Leipzig, 3LGM² model survey, 3LGM² reference model, Diagram inter-level relationships
Snapshots: No snapshots
Submitter: Sebastian Stäubert
Investigation: 3LGM²
Resources: No Resources
Study type: Not specified
Snapshots: No snapshots
The model can be opened with the 3LGM² - Three-layer Graph-based meta modelling tool, a software to support the modelling of information systems in health care in strategic information management. See also the product page in ToolPool Gesundheitsforschung (in German).
Snapshots: No snapshots
The model can be opened with the 3LGM² - Three-layer Graph-based meta modelling tool, a software to support the modelling of information systems in health care in strategic information management. See also the product page in ToolPool Gesundheitsforschung (in German).
Submitter: Matthias Löbe
Investigation: EHDS in 3LGM²
Resources: model files, screenshots
Study type: Not specified
Snapshots: No snapshots
Analysen medizinischer Datensätze
Datenanalysen sind das Herzstück datengetriebener Wissenschaft. Sie dienen einerseits zum Testen eigener Forschungshypothesen und andererseits zur Überprüfung publizierter Ergebnisse. Ziel der Übung ist es, Studierende mit Inhalten und Werkzeugen für die Durchführung einzelner Analysen vertraut zu machen. Dazu sollen mehrere aufeinander aufbauende Abfragen mit steigendem Schwierigkeitsgrad auf einen medizinischen Datensatz vorbereitet und die Ergebnisse ...
Submitter: Matthias Löbe
Investigation: MI-Lab Lerneinheiten
Resources: No Resources
Study type: Not specified
Snapshots: No snapshots
Pseudonymisierung und Anonymisierung personenbezogener Daten
Medizinische Daten sind personenbezogene Daten und können auch beim Vorliegen der Rechtsgrundlagen aus Gründen des Datenschutzes und der Datensparsamkeit nicht vollumfänglich mit Dritten geteilt werden. Gleichzeitig verpflichten neue Verordnungen wie das Gesundheitsdatennutzungsgesetz Forscher, Daten unter bestimmten Bedingungen zu anonymisieren. Die Übung soll den Studierenden an einem praktischen Datensatz den Unterschied zwischen ...
Submitter: Matthias Löbe
Investigation: MI-Lab Lerneinheiten
Resources: No Resources
Study type: Not specified
Snapshots: No snapshots
The model can be opened with the 3LGM² - Three-layer Graph-based meta modelling tool, a software to support the modelling of information systems in health care in strategic information management. See also the product page in ToolPool Gesundheitsforschung (in German).
Submitter: Sebastian Stäubert
Resource type: Experimental Assay Type
Technology type: Technology Type
Investigation: 3LGM²
Study: 3LGM² Tool
Human Diseases: No human diseases
Data files: No Data files
Snapshots: No snapshots
Abstract (Expand)
Authors: A. Winter, F. Jahn, M. Lobe, S. Staubert
Date Published: 15th May 2025
Publication Type: Journal article
PubMed ID: 40380537
Citation: Stud Health Technol Inform. 2025 May 15;327:647-651. doi: 10.3233/SHTI250428.
Abstract (Expand)
Authors: C. Draeger, S. Staubert, A. Kuntz, C. Henke, A. Winter, U. Sax, M. Lobe
Date Published: 20th Oct 2023
Publication Type: Journal article
PubMed ID: 37869821
Citation: Stud Health Technol Inform. 2023 Oct 20;309:126-130. doi: 10.3233/SHTI230755.
Abstract (Expand)
Authors: Martin Bialke, Lars Geidel, Christopher Hampf, Arne Blumentritt, Peter Penndorf, Ronny Schuldt, Frank-Michael Moser, Stefan Lang, Patrick Werner, Sebastian Stäubert, Hauke Hund, Fady Albashiti, Jürgen Gührer, Hans-Ulrich Prokosch, Thomas Bahls, Wolfgang Hoffmann
Date Published: 1st Dec 2022
Publication Type: Journal article
Citation: BMC Med. Inform. Decis. Mak. 22(1):335
Abstract (Expand)
Authors: R. Gott, S. Staubert, A. Strubing, A. Winter, A. Merzweiler, B. Bergh, K. Kaulke, T. Bahls, W. Hoffmann, M. Bialke
Date Published: 24th Sep 2022
Publication Type: Journal article
PubMed ID: 36150711
Citation: Methods Inf Med. 2022 Dec;61(S 02):e134-e148. doi: 10.1055/a-1950-2791. Epub 2022 Sep 23.
Abstract (Expand)
Authors: A. Uciteli, C. Beger, J. Wagner, A. Kiel, F. A. Meineke, S. Staubert, M. Lobe, R. Hansel, J. Schuster, T. Kirsten, H. Herre
Date Published: 24th May 2021
Publication Type: Journal article
PubMed ID: 34042877
Citation: Stud Health Technol Inform. 2021 May 24;278:66-74. doi: 10.3233/SHTI210052.
Abstract (Expand)
Authors: A. Merzweiler, S. Staubert, A. Strubing, A. Tonmbiak, K. Kaulke, J. Drepper, B. Bergh, A. Winter
Date Published: 24th May 2021
Publication Type: Journal article
PubMed ID: 34042890
Citation: Stud Health Technol Inform. 2021 May 24;278:163-170. doi: 10.3233/SHTI210065.
Abstract (Expand)
Authors: Alexandr Uciteli, Christoph Beger, Jonas Wagner, Alexander Kiel, Frank A Meineke, Sebastian Stäubert, Matthias Löbe, René Hänsel, Judith Schuster, Toralf Kirsten, Heinrich Herre
Date Published: 1st May 2021
Publication Type: InCollection
Citation: In German Medical Data Sciences: Bringing Data to Life of Studies in health technology and informatics, IOS Press
Abstract (Expand)
Authors: A. Uciteli, C. Beger, J. Wagner, T. Kirsten, F. A. Meineke, S. Staubert, M. Lobe, H. Herre
Date Published: 26th Apr 2021
Publication Type: Journal article
DOI: 10.3205/mibe000219
Citation: Uciteli A, Beger C, Wagner J, Kirsten T, Meineke FA, Staubert S, Lobe M, Herre H: Ontological modelling and FHIR Search based representation of basic eligibility criteria. GMS Med Inform Biom Epidemiol 2021;17(2):Doc05.
Abstract (Expand)
Authors: M. Lobe, F. Matthies, S. Staubert, F. A. Meineke, A. Winter
Date Published: 16th Jun 2020
Publication Type: Journal article
PubMed ID: 32570413
Citation: Stud Health Technol Inform. 2020 Jun 16;270:392-396. doi: 10.3233/SHTI200189.
Abstract (Expand)
Authors: R. Bild, M. Bialke, K. Buckow, T. Ganslandt, K. Ihrig, R. Jahns, A. Merzweiler, S. Roschka, B. Schreiweis, S. Staubert, S. Zenker, F. Prasser
Date Published: 5th Jun 2020
Publication Type: Journal article
PubMed ID: 32503529
Citation: BMC Med Inform Decis Mak. 2020 Jun 5;20(1):103. doi: 10.1186/s12911-020-01138-6.
...to be opened and analysed by 3LGM² Tool (https://www.3lgm2.de/en/Tool/index.jsp )
Investigations: EHDS in 3LGM²
Studies: The European Health Data Space (EHDS) as 3LGM²-...
Resources: model files
Motivation: By using the NLP4CR tool, medical facts (e.g. diagnoses, laboratory values) can be extracted from German medical full texts.
Description: The NLP4CR tool is a prototype that demonstrates the applicability of Apache UIMA and cTakes to medical full texts in German language.
Creators: Sebastian Stäubert, Matthias Löbe, Colleen Goldberg
Submitter: Christoph Beger
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Human Disease: Not specified
Investigations: No Investigations
Studies: No Studies
Resources: No Resources
Creator: Sebastian Stäubert
Submitters: Sebastian Stäubert, Alfred Winter
Investigations: EHDS in 3LGM²
Studies: The European Health Data Space (EHDS) as 3LGM²-...
Resources: screenshots
Creator: Sebastian Stäubert
Submitters: Sebastian Stäubert, Alfred Winter
Investigations: EHDS in 3LGM²
Studies: The European Health Data Space (EHDS) as 3LGM²-...
Resources: screenshots
Creator: Sebastian Stäubert
Submitter: Sebastian Stäubert
Investigations: EHDS in 3LGM²
Studies: The European Health Data Space (EHDS) as 3LGM²-...
Resources: screenshots
Creator: Sebastian Stäubert
Submitter: Sebastian Stäubert
Investigations: EHDS in 3LGM²
Studies: The European Health Data Space (EHDS) as 3LGM²-...
Resources: screenshots
The need to manage research data is recognised by the research community - sponsors, legislators, publishers expect and encourage good scientific practice, which not only includes archiving, but also the availability of research data and results in line with FAIR principles. The publication gives a brief overview of the Leipzig Health Atlas (LHA), which is a project for the presentation and exchange of a wide range of publications, (bio) medical data (e.g. clinical, epidemiological, molecular), ...
Creators: René Hänsel, Matthias Löbe, Sebastian Stäubert, Christoph Beger
Submitter: Christoph Beger
Investigations: No Investigations
Studies: No Studies
Resources: No Resources
The need to manage research data is recognised by the research community - sponsors, legislators, publishers expect and encourage good scientific practice, which not only includes archiving, but also the availability of research data and results in line with FAIR principles. The publication gives a brief overview of the Leipzig Health Atlas (LHA), which is a project for the presentation and exchange of a wide range of publications, (bio) medical data (e.g. clinical, epidemiological, molecular), ...
Creators: René Hänsel, Matthias Löbe, Sebastian Stäubert, Christoph Beger
Submitter: Christoph Beger
Investigations: No Investigations
Studies: No Studies
Resources: No Resources
Projects: Student Theses, 3LGM² Enterprise Architecture Modeling, Inclusion Health Informatics
Web page: Not specified
Projects: MI-Lab, FAIR4Health
Web page: https://ec.europa.eu/programmes/horizon2020/en/h2020-section/science-and-society
The medical informatics initiative was created to close the gap between research and healthcare. All of Germany’s university hospitals have joined forces with research institutions, businesses, health insurers, and patient advocacy groups to create a framework that harnesses research findings to the direct benefit of patients. The German Federal Ministry of Education and Research (BMBF) is investing around 160 million euros in the programme through 2021. The digitisation of medicine is creating ...
Projects: Methodical Use Case PheP, SMITH - Smart Medical Information Technology for Healthcare, WP 1.5 of POLAR_MI (Polypharmacy, Drug Interactions, Risks) - Development of risk models, POLAR - Polypharmacy, Drug Interactions, Risks