Design and Concept of the SMITH Phenotyping Pipeline.


Phenotyping means the determination of clinical relevant phenotypes, e.g. by classification or calculation based on EHR data. Within the German Medical Informatics Initiative, the SMITH consortium is working on the implementation of a phenotyping pipeline. to extract, structure and normalize information from the EHR data of the hospital information systems of the participating sites; to automatically apply complex algorithms and models and to enrich the data within the research data warehouses of the distributed data integration centers with the computed results. Here we present the overall picture and essential building blocks and workflows of this concept.

PubMed ID: 31483269

Projects: SMITH - Smart Medical Information Technology for Healthcare

Publication type: Journal article

Journal: Stud Health Technol Inform

Human Diseases: No Human Disease specified

Citation: Stud Health Technol Inform. 2019 Sep 3;267:164-172. doi: 10.3233/SHTI190821.

Date Published: 3rd Sep 2019

Registered Mode: by PubMed ID


Views: 2475

Created: 29th Jul 2020 at 08:25

Last updated: 7th Dec 2021 at 17:58

help Attributions


Related items

Powered by
Copyright © 2008 - 2021 The University of Manchester and HITS gGmbH
Institute for Medical Informatics, Statistics and Epidemiology, University of Leipzig

By continuing to use this site you agree to the use of cookies